rs33268496 SNP Detail

Summary

• ID
  rs33268496
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:107462801 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGTA GCCCTTTTGG AGCATTCACA
  Y
  CCTCTACCTG TTCTGGCTTA TTCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47777639	NES11985516	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	C	T	C		C	C	T	C		T
ss136948582	ENSMUSSNP144509	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss323191738	CHEV_9_107487933	CHEVERUD	SCREENING_POP	f	SNP											T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33268496					SNP	T	T	T	T	T	T	T	C	T	C	T	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47777639	NES11985516	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107462801 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22297	CpG island 22297	1816 bp proximal
Gm16343	predicted gene 16343	within coordinates
Hyal3	hyaluronoglucosaminidase 3	within coordinates
Naa80	N(alpha)-acetyltransferase 80, NatH catalytic subunit	1554 bp downstream
Rr401663	regulatory region 401663	1735 bp upstream
Rr686552	regulatory region 686552	1856 bp proximal