rs33268498 SNP Detail

Summary

• ID
  rs33268498
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:107463469 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTATGGTGA TGTACTGGGA GATATCAGTG GTCCCTGGTC
  TAAGGACTGT TATTCTCTGA ATGGAAGTTC TAAGAAATTA CTTAGAGGCT CTGTTAAAAG
  Y
  GCTCTACTCT AGAGGCAGAA TCATAGCAGT AAACCAAATG GTGTCGTGGT AAAGTTGGGC
  CCTGATGGAT CTGGCCAGTC AAGCTTGGGC TTAACAGTTC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47777641	NES11985461	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs33268498					SNP	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47777641	NES11985461	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107463469 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22297	CpG island 22297	1148 bp proximal
Gm16343	predicted gene 16343	within coordinates
Gm68835	predicted gene, 68835	1986 bp downstream
Hyal3	hyaluronoglucosaminidase 3	within coordinates
Ifrd2	interferon-related developmental regulator 2	1448 bp upstream
Rr401663	regulatory region 401663	1067 bp upstream
Rr686552	regulatory region 686552	1188 bp proximal
Rr686553	regulatory region 686553	1383 bp proximal
Tssr87008	transcription start site region 87008	1372 bp upstream
Tssr87009	transcription start site region 87009	1403 bp upstream
Tssr87010	transcription start site region 87010	1441 bp upstream
Tssr87011	transcription start site region 87011	1487 bp upstream
Tssr87012	transcription start site region 87012	1596 bp upstream