rs33268982 SNP Detail

Summary

• ID
  rs33268982
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:15418654 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGGCAGTCA GTGGCTGTTC ACTGTCCTCA ATGCTGTTCT
  TCCACTCCTG GAGCTGTGAG CAGCTGATAC ACTAAAGCAG ACACAAGGGC TCGCCTCAGG
  Y
  TTCTCGAAGG CAACTCTCCT TCCCTAAAAC TTGACCTGCA TACTTACCAG ACACAAGTGA
  AAAGACCTTT TTGCGGCCCC TGTGACCTGC TGACACCAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39515001	mCV25027491	ABI	CRAMUS_MOUSE	f	SNP		C	C					T		C
ss60539081	NES16556266	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C		T	C	T	T		C	C	C	C		C
ss145202491	ENSMUSSNP3779132	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							C
ss325306438	CHEV_17_15335356	CHEVERUD	SCREENING_POP	f	SNP													C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33268982					SNP	C	C	C	C	C	C	C	T	T	C	T	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60539081	NES16556266	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:15418654 () rs orientation: forward

Symbol	Name	Function Class
Gm35502	predicted gene, 35502	within coordinates
Rr329518	regulatory region 329518	347 bp proximal
Rr334312	regulatory region 334312	147 bp proximal