rs33269204 SNP Detail

Summary

• ID
  rs33269204
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102284207 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACCGTGGG CCAAGTTATG
  TCCCGAGGGC AGCGGGGCAA TTCACAGTGC TTGGTGACTC TGTGGTTTTG GCTCTTGGCA
  GAATCTGTGA CTGTGTAGTG CCTAGTGACC CACTATGGTA CCCTGCATGG GGAGTTCTCT
  TGCCCACTGT GTAACAGTGG CCAGGGCACA AAGCCTGGCA CTGAGCGCAT ATTCAGCAAT
  R
  ATGCAATGAT TCACCTAGAA CGAGATGAAG CTTTTCAAGT AGCATCATCA CGTTTGTTTG
  TTTGTTTAAA TATCTCACTG CTACAGGATA CAAAGAAACT TTTCTCTCAA GTTCTTAAAA
  GGAAAAAATA ATATTGGTGA GGGACTGAAT GTGAGGGGAG CAAGATTATT AGTCTGGGAA
  AGTCCACTTT AATACCAGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45258085	mCV23728608	ABI	CRAMUS_MOUSE	f	SNP	G		A	G
ss147112353	ENSMUSSNP4036493	ENSEMBL	ENSEMBL_Sanger	f	SNP		G			G
ss320437761	CHEV_2_102294019	CHEVERUD	SCREENING_POP	f	SNP						A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33269204					SNP	G	G	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102284207 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11976	CpG island 11976	1582 bp distal
Rr561696	regulatory region 561696	1273 bp distal
Rr561697	regulatory region 561697	24 bp distal
Rr561698	regulatory region 561698	271 bp distal