rs33269306 SNP Detail

Summary

• ID
  rs33269306
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:107463893 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATGT CATGGCCATG GTCGATGTGC
  Y
  CGGAAAGACC CAGGACAAAT GGAAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47777649	NES11985465	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	C	C	T	C		C	T	T	C		T
ss136948594	ENSMUSSNP844791	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T					C
ss323191742	CHEV_9_107489025	CHEVERUD	SCREENING_POP	f	SNP											T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33269306					SNP	T	T	T	T	T	T	C	C	T	C	T	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47777649	NES11985465	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107463893 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22297	CpG island 22297	724 bp proximal
Gm16343	predicted gene 16343	within coordinates
Gm68835	predicted gene, 68835	1562 bp downstream
Hyal3	hyaluronoglucosaminidase 3	within coordinates
Ifrd2	interferon-related developmental regulator 2	1024 bp upstream
Rr401663	regulatory region 401663	643 bp upstream
Rr686552	regulatory region 686552	764 bp proximal
Rr686553	regulatory region 686553	959 bp proximal
Rr686554	regulatory region 686554	1953 bp proximal
Tssr87008	transcription start site region 87008	948 bp upstream
Tssr87009	transcription start site region 87009	979 bp upstream
Tssr87010	transcription start site region 87010	1017 bp upstream
Tssr87011	transcription start site region 87011	1063 bp upstream
Tssr87012	transcription start site region 87012	1172 bp upstream