rs33269309 SNP Detail

Summary

• ID
  rs33269309
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:107464375 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTGAGTTCC AGGACAGCCA GGGCTATACA GAGAAACCCT
  GTCTCAGAAA AAAAAAAAAA AAAAAAAAAG AAGCTTCCGG GTCAGTTCCA GGCATTTAAG
  K
  TGACTAGCCT AGGACTTTGT TCCTATACCC CAGCGTATCT ATAGAGAAGT AAAATCTAGG
  TTCAGACAAC CCCTACATGC CTCCCAACAC ACATCCCCCC                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss47777657	NES11985371	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	T	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs33269309					SNP	G	G	G	G	T	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47777657	NES11985371	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107464375 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22297	CpG island 22297	242 bp proximal
Gm16343	predicted gene 16343	within coordinates
Gm68835	predicted gene, 68835	1080 bp downstream
Hyal3	hyaluronoglucosaminidase 3	mRNA-UTR
Ifrd2	interferon-related developmental regulator 2	542 bp upstream
Rr401663	regulatory region 401663	161 bp upstream
Rr686552	regulatory region 686552	282 bp proximal
Rr686553	regulatory region 686553	477 bp proximal
Rr686554	regulatory region 686554	1471 bp proximal
Tssr87008	transcription start site region 87008	466 bp upstream
Tssr87009	transcription start site region 87009	497 bp upstream
Tssr87010	transcription start site region 87010	535 bp upstream
Tssr87011	transcription start site region 87011	581 bp upstream
Tssr87012	transcription start site region 87012	690 bp upstream