rs33270505 SNP Detail

Summary

• ID
  rs33270505
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:107464863 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTCTCCGGA ATGGACTACT ACTCCCGTCG TGCACTGCGC
  ACAACTTGGG CGGTGCTAAT CTGTGTACGC TGATGCCTGG GGATAGTAGT TTCGGCCGCG
  W
  GTATGTGGAT CTGAACTTGG TGGCCGGGAA CTCACCTTCC CAGCGACCCA TTTGACAGGG
  CGGGGCGCCT CACGAAGATG GTGGCGCGCG CGGCGTGTGG                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47777663	NES11985374	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33270505					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47777663	NES11985374	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107464863 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22297	CpG island 22297	within coordinates
Gm16343	predicted gene 16343	196 bp upstream
Gm68835	predicted gene, 68835	592 bp downstream
Hyal3	hyaluronoglucosaminidase 3	305 bp downstream
Ifrd2	interferon-related developmental regulator 2	54 bp upstream
Rr401663	regulatory region 401663	26 bp downstream
Rr686552	regulatory region 686552	12 bp distal
Rr686553	regulatory region 686553	within coordinates
Rr686554	regulatory region 686554	983 bp proximal
Tssr87008	transcription start site region 87008	8 bp downstream
Tssr87009	transcription start site region 87009	9 bp upstream
Tssr87010	transcription start site region 87010	47 bp upstream
Tssr87011	transcription start site region 87011	93 bp upstream
Tssr87012	transcription start site region 87012	202 bp upstream