rs33270509 SNP Detail

Summary

• ID
  rs33270509
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:107465375 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCGAA ATCCCGCGCC GCAACGATGA
  Y
  TTGACCAGCA TTAAGGACCT AGGTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46298331	mCV22576881	ABI	CRAMUS_MOUSE	f	SNP		T					C		C
ss47777669	NES11985377	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		T	C	T	C		C	T	T	C		T
ss136948606	ENSMUSSNP3541358	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							C
ss323191757	CHEV_9_107490507	CHEVERUD	SCREENING_POP	f	SNP												T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33270509					SNP	T	T	T	T	T	T	C	T	C	T	C	T	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47777669	NES11985377	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107465375 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22297	CpG island 22297	within coordinates
Gm16343	predicted gene 16343	708 bp upstream
Gm68835	predicted gene, 68835	80 bp downstream
Hyal3	hyaluronoglucosaminidase 3	817 bp downstream
Ifrd2	interferon-related developmental regulator 2	within coordinates
Rr401663	regulatory region 401663	538 bp downstream
Rr686552	regulatory region 686552	524 bp distal
Rr686553	regulatory region 686553	within coordinates
Rr686554	regulatory region 686554	471 bp proximal
Tssr87008	transcription start site region 87008	520 bp downstream
Tssr87009	transcription start site region 87009	496 bp downstream
Tssr87010	transcription start site region 87010	430 bp downstream
Tssr87011	transcription start site region 87011	375 bp downstream
Tssr87012	transcription start site region 87012	287 bp downstream