rs33271515 SNP Detail

Summary

• ID
  rs33271515
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:107465570 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGAA AGGTAGAGAA TTGGGGCCCT
  R
  TCAATTGGAC TAGAGACCGG GAGGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46317794	mCV22576782	ABI	CRAMUS_MOUSE	f	SNP		A	A			G		G
ss47777677	NES11985381	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A		A	G	A	G		G	A	A	A		A
ss136948612	ENSMUSSNP1432101	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A					G
ss323191760	CHEV_9_107490702	CHEVERUD	SCREENING_POP	f	SNP											A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33271515					SNP	A	A	A	A	A	G	A	G	A	G	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47777677	NES11985381	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107465570 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22297	CpG island 22297	83 bp distal
Gm16343	predicted gene 16343	903 bp upstream
Gm68835	predicted gene, 68835	within coordinates
Hyal3	hyaluronoglucosaminidase 3	1012 bp downstream
Ifrd2	interferon-related developmental regulator 2	within coordinates
Rr401663	regulatory region 401663	733 bp downstream
Rr686552	regulatory region 686552	719 bp distal
Rr686553	regulatory region 686553	within coordinates
Rr686554	regulatory region 686554	276 bp proximal
Rr686555	regulatory region 686555	1913 bp proximal
Tssr87008	transcription start site region 87008	715 bp downstream
Tssr87009	transcription start site region 87009	691 bp downstream
Tssr87010	transcription start site region 87010	625 bp downstream
Tssr87011	transcription start site region 87011	570 bp downstream
Tssr87012	transcription start site region 87012	482 bp downstream