rs33271519 SNP Detail

Summary

• ID
  rs33271519
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:107465920 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTTTAATG TGGCTTGGGT
  CTCGGGGCAT TTAATAGGGT GGTGACAGTT CCACAAGAAC TAGTACTGAA AGCATATACT
  TACCGAGAGT GGTCTTAGAA TTATGGCAGG CCCTGTGAGG GGAGCTTCTG AGACGGTAAA
  GAATCTGGCG CAAGGGCCCA GCAGCCAAAG GGACCACAAT ACAGTGCGGC AGATGAGACC
  S
  TCCGGGCAGT TTTGACAAGT AGGATAGTAA GAGAAGAGGT GAACAGAAAT CAACGTGTGG
  GCTGAACGTT TTTTTACAAG CAAGTAATGT TAGTGGTCCC TAAGGTGTAA GGACTCCTAC
  TGGGTCAGAA CCTGTCCAGG GTGCCTACCA TAGTAGCTGC CCTATTTAAG GCCAGTCTTC
  AGCCCTGGAG AGAGCTCACA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47777685	NES11985385	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	C	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33271519					SNP	G	G	G	G	G	C	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47777685	NES11985385	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107465920 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22297	CpG island 22297	433 bp distal
Gm16343	predicted gene 16343	1253 bp upstream
Gm68835	predicted gene, 68835	64 bp upstream
Hyal3	hyaluronoglucosaminidase 3	1362 bp downstream
Ifrd2	interferon-related developmental regulator 2	within coordinates
Rr401663	regulatory region 401663	1083 bp downstream
Rr686552	regulatory region 686552	1069 bp distal
Rr686553	regulatory region 686553	75 bp distal
Rr686554	regulatory region 686554	within coordinates
Rr686555	regulatory region 686555	1563 bp proximal
Tssr87008	transcription start site region 87008	1065 bp downstream
Tssr87009	transcription start site region 87009	1041 bp downstream
Tssr87010	transcription start site region 87010	975 bp downstream
Tssr87011	transcription start site region 87011	920 bp downstream
Tssr87012	transcription start site region 87012	832 bp downstream