rs33271583 SNP Detail

Summary

• ID
  rs33271583
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24036129 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGTA CCAGGAGAGA GCTGTTTTAG
  Y
  GCCTCATTTG TGCAACAAAA AGGAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39516131	mCV22837885	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss145333375	ENSMUSSNP996762	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss325327511	CHEV_17_23954122	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33271583					SNP	T	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24036129 () rs orientation: forward

Symbol	Name	Function Class
Srrm2	serine/arginine repetitive matrix 2	within coordinates
Tssr142965	transcription start site region 142965	1964 bp downstream
Tssr142966	transcription start site region 142966	1917 bp downstream
Tssr142967	transcription start site region 142967	1871 bp downstream
Tssr142968	transcription start site region 142968	1850 bp downstream
Tssr142969	transcription start site region 142969	1088 bp downstream
Tssr142970	transcription start site region 142970	1054 bp downstream
Tssr142971	transcription start site region 142971	985 bp downstream
Tssr142972	transcription start site region 142972	947 bp downstream
Tssr142973	transcription start site region 142973	924 bp downstream
Tssr142974	transcription start site region 142974	886 bp downstream
Tssr142975	transcription start site region 142975	866 bp downstream
Tssr142976	transcription start site region 142976	837 bp downstream
Tssr142977	transcription start site region 142977	780 bp downstream
Tssr142978	transcription start site region 142978	738 bp downstream
Tssr142979	transcription start site region 142979	1790 bp upstream
Tssr146670	transcription start site region 146670	1885 bp upstream