rs33272082 SNP Detail

Summary

• ID
  rs33272082
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:70953985 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGCGAGTGG AGCCACCCCA CCGCTGCCTC CACCCCTCGA
  AGTGGTGAGC ACCTCTCCAG GGCTGGCTGG CCCATGGAAT CCCCAATCCA TCCTGTTCCT
  Y
  CCCCCCCCCA CCCTTTTTTT GAGACAGCGT CTTCAGGTAG CGCATGCTGG CCTTAAATTC
  AGTATGTAGT CAAGGATGAC CTCGAGCTCC TGGTCTTTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46255905	mCV22782749	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C	T
ss145126684	ENSMUSSNP3871791	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33272082					SNP	T	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:70953985 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi20464	CpG island 20464			14 bp distal
Cpgi20465	CpG island 20465			956 bp proximal
Cpgi20466	CpG island 20466			1542 bp proximal
Crlf1	cytokine receptor-like factor 1			Intron
				Noncoding-Transcript-Variant
Gm63784	predicted gene, 63784			within coordinates
Rr664779	regulatory region 664779			611 bp proximal
Rr664780	regulatory region 664780			740 bp proximal
Rr664781	regulatory region 664781			1919 bp proximal
Tssr77747	transcription start site region 77747			163 bp downstream