rs33272513 SNP Detail

Summary

• ID
  rs33272513
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:6610172 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTGTAGGAA AAATAGAGCC
  AGCTCCTACA GATTGTCGTC TGTCTTTTGT GGCATGCATA CCCCCCCAAT TTAATAAATG
  TAATAAGTTA AAAAGCATAG ATGGGCACAA ATAGATGAAA AAACAAAATC ACTCATAGGT
  ATAATATCAC TAAAATTTAT GATCATCATC AACATTTCTA AAAGCTCTCA AAAATAGTGG
  R
  TGTGAGAGAT GACAAGATTG GGAGTCATGA GTTCAAAAGA GCAAGAGATC ATGGTTAGTG
  GATTAAATAG CAAATATCTA AGTACATTCG TGGTATTCTC TTTATAGCAA CCAAAACACT
  TTTAGTTTTA GAGTTGTTTT ACTAAATTGT TGAAAAACCA CTAAACTTTG TATGAGTTAT
  TCCAGAAAGC AGAACGAAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47777312	NES11716019	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G		G	G	G	A		A
ss321732611	CHEV_6_6560172	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33272513					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47777312	NES11716019	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:6610172 () rs orientation: forward

Symbol	Name	Function Class
Gm66705	predicted gene, 66705	570 bp upstream