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rs33272741 SNP Detail
Summary
  • ID
    rs33272741
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr2:126776231 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CTATTACCTT CTGTGCAAGT
    TAATTTCAGC TAGGCAAAGA GGAAGGAAGC ATTAGTCTGA AAGCCAAGGG AGGCAACTAC
    AGAACTACAG AACTACAGAA CTGGACCTTG GCTGAAGTTA GGAGAGGGGG AGAGTGAGAA
    GAGGCAGAGG GTGAAATAGT TGCACAGCTT GGAACTTGAG ACTTCCTCAT TGGCATCTTC
    S
    TGGGGGAATT CCTGAAGGAA GCTCTCCCAC AGTTCTGCGT GGGTTTTTTC TGTAGTTGTC
    TGTCCCCTGG CTTCCCCCTC TGGTCCAGTT TCAATCTATT TGTAACCCTA CCAGCTGTAA
    GAACCCCCTA GACAGAAACT GCCTGTCAAG CATTGTTGCA TTTACTCTCA GCCACTTTTA
    GAATCCTTCT AGGACACTGA                                            
    
    S = C/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
LG/J
SM/J
ss45257851 mCV22628483 ABI CRAMUS_MOUSE f SNP C G
ss320498582 CHEV_2_126760047 CHEVERUD SCREENING_POP f SNP C G
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
LG/J
SM/J
rs33272741 SNP C G C G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:126776231 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi12210 CpG island 12210 907 bp distal
Gm75308 predicted gene, 75308 within coordinates
Rr564422 regulatory region 564422 1224 bp distal
Rr564423 regulatory region 564423 1235 bp distal
Rr564424 regulatory region 564424 1087 bp distal
Rr564425 regulatory region 564425 586 bp distal
Sppl2a signal peptide peptidase like 2A 1076 bp upstream
Tssr26085 transcription start site region 26085 1221 bp upstream
Tssr26086 transcription start site region 26086 1178 bp upstream
Tssr26087 transcription start site region 26087 1147 bp upstream
Tssr26088 transcription start site region 26088 1084 bp upstream
Tssr26089 transcription start site region 26089 1070 bp upstream
Tssr26090 transcription start site region 26090 431 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory