CTATTACCTT CTGTGCAAGT TAATTTCAGC TAGGCAAAGA GGAAGGAAGC ATTAGTCTGA AAGCCAAGGG AGGCAACTAC AGAACTACAG AACTACAGAA CTGGACCTTG GCTGAAGTTA GGAGAGGGGG AGAGTGAGAA GAGGCAGAGG GTGAAATAGT TGCACAGCTT GGAACTTGAG ACTTCCTCAT TGGCATCTTC S TGGGGGAATT CCTGAAGGAA GCTCTCCCAC AGTTCTGCGT GGGTTTTTTC TGTAGTTGTC TGTCCCCTGG CTTCCCCCTC TGGTCCAGTT TCAATCTATT TGTAACCCTA CCAGCTGTAA GAACCCCCTA GACAGAAACT GCCTGTCAAG CATTGTTGCA TTTACTCTCA GCCACTTTTA GAATCCTTCT AGGACACTGA S = C/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129X1/SvJ |
A/J |
LG/J |
SM/J |
---|---|---|---|---|---|---|---|---|---|
ss45257851 | mCV22628483 | ABI | CRAMUS_MOUSE | f | SNP | C | G | ||
ss320498582 | CHEV_2_126760047 | CHEVERUD | SCREENING_POP | f | SNP | C | G | ||
SNP Consensus Information | |||||||||
SNP | Consensus Type | 129X1/SvJ |
A/J |
LG/J |
SM/J |
||||
rs33272741 | SNP | C | G | C | G |
Location: Chr2:126776231 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi12210 | CpG island 12210 | 907 bp distal | ||||||
Gm75308 | predicted gene, 75308 | within coordinates | ||||||
Rr564422 | regulatory region 564422 | 1224 bp distal | ||||||
Rr564423 | regulatory region 564423 | 1235 bp distal | ||||||
Rr564424 | regulatory region 564424 | 1087 bp distal | ||||||
Rr564425 | regulatory region 564425 | 586 bp distal | ||||||
Sppl2a | signal peptide peptidase like 2A | 1076 bp upstream | ||||||
Tssr26085 | transcription start site region 26085 | 1221 bp upstream | ||||||
Tssr26086 | transcription start site region 26086 | 1178 bp upstream | ||||||
Tssr26087 | transcription start site region 26087 | 1147 bp upstream | ||||||
Tssr26088 | transcription start site region 26088 | 1084 bp upstream | ||||||
Tssr26089 | transcription start site region 26089 | 1070 bp upstream | ||||||
Tssr26090 | transcription start site region 26090 | 431 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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