rs33272883 SNP Detail

Summary

• ID
  rs33272883
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:173419769 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCACCCATG TGCTTGGAGT
  TAGGAGCCCT TGAGTGGCCA GCGCTCCAAG GGGCCGTTCT AGATGGGGCT CGAGTGGTTG
  GGTTTGACTT GGTCACCTTG GATTCTCTGG CAGTTACGAG TGTCATGGGG ACCCAGGGCA
  GGAGTGGGCC GGGGGGGGGG GCCATTGAGT GGGAGGAGCT CATGGGGTGC GGGAAGGGGT
  Y
  GGGCAGGGGC CACCTCGGTC CAGGAAATGC AGCCGCTGCA GGTTGAAGGG GATGCCGACC
  ATCAGGTCCA GCTCTTCTTT GAGCTCCCGC ACTGTCATGT CGTTGCGGCA GTTGGCCACG
  CGGAACAGCT CCCCAGTCTC CTCCAGCTTC ACCCGCAGGA CATAGACGTC AGGAGTCAAG
  TCTGGCGACA CGGTGGAGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45258801	mCV22939385	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C
ss320625290	CHEV_2_173403477	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33272883					SNP	T	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173419769 () rs orientation: forward

Symbol	Name	Function Class
Ankrd60	ankyrin repeat domain 60	within coordinates
Cpgi12846	CpG island 12846	within coordinates
Gm74867	predicted gene, 74867	within coordinates
Gm74874	predicted gene, 74874	within coordinates
Rr571985	regulatory region 571985	27 bp distal
Rr571986	regulatory region 571986	212 bp proximal
Tssr27995	transcription start site region 27995	195 bp downstream
Tssr27996	transcription start site region 27996	212 bp downstream
Tssr27997	transcription start site region 27997	227 bp downstream
Tssr27998	transcription start site region 27998	239 bp downstream
Tssr27999	transcription start site region 27999	324 bp downstream