rs33273001 SNP Detail

Summary

• ID
  rs33273001
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:96357441 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAACCTGT GCACTGGTCT
  CTAATTGGCT ACGTAGAACA AAAACAAAAA CAGACAAACT CCAAAAACCA AAACAAAACC
  CTAGACGTGT TTCGAAAACT CCAAGCAGTG TACTGCTCCT TAGGTCTGAT CAGCACAGCT
  TGCCAGCAGC CGGAAACCAA AAAGCAGACG GATGAAAGAT TAAGGTTTGC TCAAAGGGGG
  R
  TGGAAGGGGG TGAGAGAGTG GGACCTCCTG GCCCGCCTTG GGTGGAGGCG AAGTTTGATG
  GATTCTGTTT TCTCTTTGCT ATGAAGAAGA TTGAACTCAG AGGCGCGCAC ACGCTAGCTC
  CGCGCACGGT CGCCTAGCAA TATTCATTTA AAGAAAAACC GAATCTTAAG AAGGCCAAGA
  GTATAGCGAA GGAAGCTGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45758156	mCV25015050	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss148870808	ENSMUSSNP7052282	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss321616895	CHEV_5_96638601	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs33273001					SNP	A	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:96357441 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16074	CpG island 16074	381 bp proximal
Gm72185	predicted gene, 72185	within coordinates
Mrpl1	mitochondrial ribosomal protein L1	within coordinates
Rr367885	regulatory region 367885	369 bp upstream
Rr614892	regulatory region 614892	671 bp distal
Rr614893	regulatory region 614893	79 bp distal
Rr614894	regulatory region 614894	within coordinates
Rr614895	regulatory region 614895	460 bp proximal
Rr614896	regulatory region 614896	573 bp proximal
Tssr47395	transcription start site region 47395	94 bp downstream
Tssr47396	transcription start site region 47396	162 bp upstream
Tssr47397	transcription start site region 47397	546 bp upstream
Tssr51962	transcription start site region 51962	423 bp downstream