rs33273475 SNP Detail

Summary

• ID
  rs33273475
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:6610190 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGCTCCTA CAGATTGTCG
  TCTGTCTTTT GTGGCATGCA TACCCCCCCA ATTTAATAAA TGTAATAAGT TAAAAAGCAT
  AGATGGGCAC AAATAGATGA AAAAACAAAA TCACTCATAG GTATAATATC ACTAAAATTT
  ATGATCATCA TCAACATTTC TAAAAGCTCT CAAAAATAGT GGGTGTGAGA GATGACAAGA
  Y
  TGGGAGTCAT GAGTTCAAAA GAGCAAGAGA TCATGGTTAG TGGATTAAAT AGCAAATATC
  TAAGTACATT CGTGGTATTC TCTTTATAGC AACCAAAACA CTTTTAGTTT TAGAGTTGTT
  TTACTAAATT GTTGAAAAAC CACTAAACTT TGTATGAGTT ATTCCAGAAA GCAGAACGAA
  AGGGGAAACT GTGTCAACAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47777314	NES11716020	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T		T	T	T	T		C
ss321732612	CHEV_6_6560190	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33273475					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47777314	NES11716020	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:6610190 () rs orientation: forward

Symbol	Name	Function Class
Gm66705	predicted gene, 66705	552 bp upstream