rs33273705 SNP Detail

Summary

• ID
  rs33273705
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:85438312 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCTA TGTCATTGCT CCAGGTCATG
  S
  GAGCCACCCT TCCTCTGCTT CCCTA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss46255818	mCV24193682	ABI	CRAMUS_MOUSE	f	SNP		C					G	C
ss60644200	NES16268970	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C			C		G	G		C
ss145392442	ENSMUSSNP6260900	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						C
ss322751422	CHEV_8_87235582	CHEVERUD	SCREENING_POP	f	SNP										C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs33273705					SNP	C	C	C	C	C	C	G	C	C	C	G	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60644200	NES16268970	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85438312 () rs orientation: forward

Symbol	Name	Function Class
Nfix	nuclear factor I/X	within coordinates
Rr178192	regulatory region 178192	1712 bp distal
Rr178193	regulatory region 178193	112 bp distal
Rr178194	regulatory region 178194	889 bp proximal
Rr187003	regulatory region 187003	88 bp proximal