rs33273794 SNP Detail

Summary

• ID
  rs33273794
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:128811670 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATAAAGGA AAAAGGAAAA
  AAAAAAAAAG AGCCATCAAG ATGAATCTAT GTGTTCTTCA AACCTTCAAA CTACTGTTTG
  TGCCAATATC TTGGCATTTC TCATTAACTT TCTTTTGTTG TTGTTTTCAA GACAGGGTTT
  CTCTGAATAG TCCTGGCTGT CCTGGAACTC AGAGATCCAC TTGCCTCTGC CTCCTGAGTG
  Y
  TGGCATTAAA GGCTTGTGCC ACCATTCTCA TTAACTCTCT AAGAGTGAAT GAGATTAGCT
  TTATTTTTTT CTTTCCCTAC ACACACCAGG CTAATTCTAC ACACACATAC ACCGCCCAGT
  CCTCCAGCCT CCACCTCCAG AATGCTGGGC ATGCTCCCCC ATACCCAAAG AATGCCGATA
  CTTCAAAAAA GGAAATTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J
ss45758350	mCV23759957	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss149244945	ENSMUSSNP6884903	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J
rs33273794					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:128811670 () rs orientation: forward

Symbol	Name	Function Class
4930553I04Rik	RIKEN cDNA 4930553I04 gene	754 bp downstream
Cpgi16665	CpG island 16665	1242 bp proximal
Gm71554	predicted gene, 71554	746 bp downstream
Piwil1	piwi-like RNA-mediated gene silencing 1	1465 bp upstream
Rr621171	regulatory region 621171	1811 bp distal
Rr621172	regulatory region 621172	290 bp distal
Rr621173	regulatory region 621173	410 bp distal
Tssr1644	transcription start site region 1644	1554 bp upstream
Tssr48983	transcription start site region 48983	1480 bp upstream
Tssr48984	transcription start site region 48984	1519 bp upstream
Tssr48985	transcription start site region 48985	1562 bp upstream
Tssr48986	transcription start site region 48986	1636 bp upstream
Tssr53471	transcription start site region 53471	1405 bp downstream