rs33274090 SNP Detail

Summary

• ID
  rs33274090
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24658196 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCCTCTCCC GACGCACACC CACCCCCACG CTTCTGCGGT
  CGGGCGGGCG CGGGCCTGGC CTGGGTGCAG GACTGGGGAG CTGTGGCCGC GTGGGAGACT
  S
  TGGATGAACC CTCTGCGCTT GCCAGTCCCT TCTAACCCCC AGGCATCCAT GTGGATGTCA
  GGATGCTGAC TGACCTCCAG GGAGGTCGGG CCTGGATGT                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45758252	mCV23236485	ABI	CRAMUS_MOUSE	f	SNP	C	C	G
ss148093836	ENSMUSSNP4569167	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs33274090					SNP	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24658196 () rs orientation: forward

Symbol	Name	Function Class
Agap3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	within coordinates
Cpgi15603	CpG island 15603	within coordinates
Gm10472	predicted gene 10472	1489 bp upstream
Rr608324	regulatory region 608324	981 bp distal
Rr608325	regulatory region 608325	84 bp distal
Rr608326	regulatory region 608326	366 bp proximal
Tssr45426	transcription start site region 45426	1229 bp downstream
Tssr45427	transcription start site region 45427	1208 bp downstream
Tssr50327	transcription start site region 50327	1452 bp upstream