rs33274112 SNP Detail

Summary

• ID
  rs33274112
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:84443210 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGAT CTGGAATTCG AGGCTAGTCT
  R
  GGCTACACAC AAGTTTGAGG GCCTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss46256296	mCV23003960	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss145360677	ENSMUSSNP6886034	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss322745606	CHEV_8_86240480	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs33274112					SNP	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84443210 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi20654	CpG island 20654			633 bp distal
Ddx39a	DEAD box helicase 39a			Intron
				Noncoding-Transcript-Variant
Rr401010	regulatory region 401010			1306 bp downstream
Rr666292	regulatory region 666292			1023 bp distal
Rr666293	regulatory region 666293			258 bp distal
Rr666294	regulatory region 666294			7 bp proximal
Tssr78284	transcription start site region 78284			1377 bp downstream
Tssr78285	transcription start site region 78285			1343 bp downstream
Tssr78286	transcription start site region 78286			1293 bp downstream
Tssr78287	transcription start site region 78287			1269 bp downstream
Tssr78288	transcription start site region 78288			1057 bp downstream