rs33274300 SNP Detail

Summary

• ID
  rs33274300
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:66370263 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAAA ACTTGGACTA TCCAGAGAAT
  R
  AATGTTGGAG GAAGAAGAAG AGGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45758842	mCV22883475	ABI	CRAMUS_MOUSE	f	SNP	G	G						A		G
ss61174729	NES16684015	PERLEGEN	MM_PANEL2	f	SNP			G	G	G	G	G		G	G	G	G		G	G	A	G		G
ss148586895	ENSMUSSNP1811727	ENSEMBL	ENSEMBL_Sanger	f	SNP		G								G
ss321563110	CHEV_5_66604159	CHEVERUD	SCREENING_POP	f	SNP													G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33274300					SNP	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61174729	NES16684015	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:66370263 () rs orientation: forward

Symbol	Name	Function Class
Gm3822	predicted gene 3822	1827 bp upstream
Gm73278	predicted gene, 73278	1706 bp upstream
Gm73415	predicted gene, 73415	1288 bp downstream
Rr378070	regulatory region 378070	943 bp upstream
Tssr51198	transcription start site region 51198	1624 bp downstream