rs33275126 SNP Detail

Summary

• ID
  rs33275126
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:74694368 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGAAGCAAG AGACAGTCTA TAAAATAGTC AAATTATTTA
  ATGTCAAAGT TTCCCATGGC AAATGGAGAG ATTAATCCTA ACCAAGGAAG CATATCCATA
  Y
  AAGGATTCAG TTTAGGAGGA AAGAAGGAAG GAAGAGGCTT TGAAGGATGG TCATTAGAGC
  TTTATGAGCT TCTCTGCTTT GTAGAAATCA TTTTCAAAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45759322	mCV24298335	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss148671535	ENSMUSSNP5700364	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs33275126					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:74694368 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15971	CpG island 15971	1772 bp distal
Cpgi15972	CpG island 15972	1602 bp proximal
Fip1l1	factor interacting with PAPOLA and CPSF1	1742 bp upstream
Rr399135	regulatory region 399135	1802 bp downstream
Rr399136	regulatory region 399136	1493 bp upstream
Rr613305	regulatory region 613305	1458 bp distal
Rr613306	regulatory region 613306	1252 bp proximal
Rr613307	regulatory region 613307	1785 bp proximal
Scfd2	Sec1 family domain containing 2	1948 bp upstream
Tssr46674	transcription start site region 46674	1759 bp upstream
Tssr46675	transcription start site region 46675	1828 bp upstream
Tssr46676	transcription start site region 46676	1934 bp upstream
Tssr51385	transcription start site region 51385	1953 bp upstream