rs33275341 SNP Detail

Summary

• ID
  rs33275341
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:51642214 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGCCCTTG GTCCTGTGAA
  GGCTCTCAAC CCCAGTGTAG GGGAATGCCA GGGCCAGGAA GCAGGAGTGG GTGGGTTGGT
  GAACAGGGAA GGCAGAAGGA GACGGGATTT TTGGAGGGGA AATCAGGAAA GAGGATAACA
  TTTGAAATTA AAGAAAATAT CTAATAAAAA TAATAATAAT TAATAAGAGT TATTTCATTT
  W
  AAAATAAAAT TAAAAAAAGA AAAAAGAAAA CTTGAGAAGC AAGGAGAGGT GTCCTTTCTA
  GAGGCTAATA TGAACCGAAT GCTTGTACAA GATGCCAGCT GTCATACTCA GTCTCAGTTA
  ACACTCACAG AGACTCAGTC GCTGACTTGA ACTTGAATTT GTCTAACATC AAAGCCAGGT
  TTTATATAAC ATCACCAAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45759421	mCV23339539	ABI	CRAMUS_MOUSE	f	SNP	A	T	T	T
ss148434886	ENSMUSSNP2837055	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33275341					SNP	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:51642214 () rs orientation: forward

Symbol	Name	Function Class
Gm42614	predicted gene 42614	567 bp upstream
Ppargc1a	peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	within coordinates