rs33275585 SNP Detail

Summary

• ID
  rs33275585
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:42300159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCTAAGTC TCTGTGCAGC
  TGTGGGTCCT GGCTTGGAAG CTCCCTCAGA GATGAAGGAC ACATAACATA CTCTTCAGGA
  CCCTGGGACC GTTATAACAT ACAAGAGTGA CCATTCATGG TTTTCAGGGC TGTCTCAAAT
  TTTTAATATT TTGCTTTTAT TTTATACAGC TAGATATTTT TTCTTTCAAA ATTGCTTTTA
  W
  TTTTTTCTTT CAAGAAAACA ATTGAACAGC ACCCAAACTC TAGGAACTGA ATATCAAAAT
  GAAAGTATAG TATAATAAGT TTTTTTTTTT TTTTAAATGA TGCCTATTTA CTAACAAGTC
  CCACTCTCCC TATTCTGCCT TCCCACTTCA CAGGACCTCT TCCTGGCCAA GGCAGGCGGT
  GACCCTTCGT TAGACACAGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47278625	NES11102295	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs33275585					SNP	A	A	A	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47278625	NES11102295	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:42300159 () rs orientation: forward

Symbol	Name	Function Class
Cpgi200	CpG island 200	957 bp proximal
Gm28175	predicted gene 28175	within coordinates
Gm70195	predicted gene, 70195	1952 bp downstream
Rr410204	regulatory region 410204	1184 bp distal
Rr410205	regulatory region 410205	75 bp distal
Rr410206	regulatory region 410206	674 bp proximal
Rr410207	regulatory region 410207	940 bp proximal
Rr410208	regulatory region 410208	1703 bp proximal
Tssr6506	transcription start site region 6506	1189 bp downstream
Tssr6507	transcription start site region 6507	924 bp upstream