rs33275589 SNP Detail

Summary

• ID
  rs33275589
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:42300283 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGGCTGTC TCAAATTTTT
  AATATTTTGC TTTTATTTTA TACAGCTAGA TATTTTTTCT TTCAAAATTG CTTTTAATTT
  TTTCTTTCAA GAAAACAATT GAACAGCACC CAAACTCTAG GAACTGAATA TCAAAATGAA
  AGTATAGTAT AATAAGTTTT TTTTTTTTTT TAAATGATGC CTATTTACTA ACAAGTCCCA
  Y
  TCTCCCTATT CTGCCTTCCC ACTTCACAGG ACCTCTTCCT GGCCAAGGCA GGCGGTGACC
  CTTCGTTAGA CACAGTGTGC ACACACACAG CAAGTGTGCA TGCATAACAA ACAGATGCCC
  ACGGATCCCA CAATGGGTTT TCTCTATACA GCTGAGTCTT TTTACTTAAT TTAAAGATAT
  TATTGCCAAC ATCTAAAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47278631	NES11102302	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33275589					SNP	C	C	T	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47278631	NES11102302	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:42300283 () rs orientation: forward

Symbol	Name	Function Class
Cpgi200	CpG island 200	833 bp proximal
Gm28175	predicted gene 28175	within coordinates
Rr410204	regulatory region 410204	1308 bp distal
Rr410205	regulatory region 410205	199 bp distal
Rr410206	regulatory region 410206	550 bp proximal
Rr410207	regulatory region 410207	816 bp proximal
Rr410208	regulatory region 410208	1579 bp proximal
Tssr6506	transcription start site region 6506	1313 bp downstream
Tssr6507	transcription start site region 6507	800 bp upstream