rs33275640 SNP Detail

Summary

• ID
  rs33275640
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:72155474 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGCA GCTAGTACAA ACGTCCCACC
  Y
  GTGTCACACG GCAGAAAAAT CCACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46255749	mCV22795993	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	C
ss145153473	ENSMUSSNP3515722	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		C
ss322705526	CHEV_8_74226729	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33275640					SNP	C	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:72155474 () rs orientation: forward

Symbol	Name	Function Class
B3gnt3	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3	1041 bp upstream
Cpgi20570	CpG island 20570	994 bp distal
Gm18860	predicted gene, 18860	1375 bp downstream
Rr382258	regulatory region 382258	1483 bp downstream
Rr665157	regulatory region 665157	1052 bp distal
Rr665158	regulatory region 665158	551 bp distal
Rr665159	regulatory region 665159	838 bp distal
Rr665160	regulatory region 665160	620 bp distal
Rr665161	regulatory region 665161	449 bp proximal
Rr665162	regulatory region 665162	450 bp proximal
Tssr81749	transcription start site region 81749	1076 bp upstream
Tssr81750	transcription start site region 81750	1046 bp upstream
Tssr81751	transcription start site region 81751	989 bp upstream
Tssr81752	transcription start site region 81752	196 bp upstream