rs33276246 SNP Detail

Summary

• ID
  rs33276246
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:134127568 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCCG AAGAGTTCCC TGTTCGCCTC
  R
  TCAGGTAGAC TTGACCCACC ACAAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45758273	mCV23753690	ABI	CRAMUS_MOUSE	f	SNP	G	G	A					G		G
ss60846904	NES16014407	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	G	G	G		A	G	A	G		A	G	G	A		A
ss144500654	ENSMUSSNP5058814	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							G
ss321694849	CHEV_5_134574599	CHEVERUD	SCREENING_POP	f	SNP													A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33276246					SNP	G	G	A	A	G	G	G	G	A	G	A	G	A	A	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60846904	NES16014407	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134127568 () rs orientation: forward

Symbol	Name	Function Class
Castor2	cytosolic arginine sensor for mTORC1 subunit 2	1019 bp upstream
Cpgi16713	CpG island 16713	391 bp proximal
Gm15627	predicted gene 15627	within coordinates
Rr621932	regulatory region 621932	within coordinates
Rr621933	regulatory region 621933	458 bp proximal
Tssr49079	transcription start site region 49079	963 bp upstream
Tssr49080	transcription start site region 49080	975 bp upstream
Tssr49081	transcription start site region 49081	1038 bp upstream