rs33276495 SNP Detail

Summary

• ID
  rs33276495
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48043323 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTCC TCTGTAGCCA GCAGGGGTCT
  R
  ACGGCGGGCA GATTGTGTTC GGTGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss39516086	mCV22831370	ABI	CRAMUS_MOUSE	f	SNP	A	G	A	G
ss145709078	ENSMUSSNP2295261	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs33276495					SNP	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48043323 () rs orientation: forward

Symbol	Name	Function Class
Pgc	progastricsin (pepsinogen C)	within coordinates
Rr528106	regulatory region 528106	1668 bp distal
Tssr5149	transcription start site region 5149	910 bp downstream
Tssr145017	transcription start site region 145017	1793 bp downstream
Tssr145018	transcription start site region 145018	1787 bp downstream
Tssr145019	transcription start site region 145019	1756 bp downstream
Tssr145020	transcription start site region 145020	1727 bp downstream
Tssr145021	transcription start site region 145021	1697 bp downstream
Tssr145022	transcription start site region 145022	1670 bp downstream
Tssr145023	transcription start site region 145023	1632 bp downstream
Tssr145024	transcription start site region 145024	1530 bp downstream
Tssr145025	transcription start site region 145025	1167 bp downstream
Tssr145026	transcription start site region 145026	927 bp downstream
Tssr145027	transcription start site region 145027	within coordinates
Tssr145028	transcription start site region 145028	21 bp upstream
Tssr145029	transcription start site region 145029	62 bp upstream
Tssr145030	transcription start site region 145030	556 bp upstream
Tssr145031	transcription start site region 145031	572 bp upstream
Tssr145032	transcription start site region 145032	580 bp upstream
Tssr145033	transcription start site region 145033	661 bp upstream
Tssr145034	transcription start site region 145034	663 bp upstream
Tssr145035	transcription start site region 145035	1353 bp upstream
Tssr145036	transcription start site region 145036	1361 bp upstream
Tssr145037	transcription start site region 145037	1405 bp upstream
Tssr145038	transcription start site region 145038	1415 bp upstream
Tssr145039	transcription start site region 145039	1780 bp upstream
Tssr145040	transcription start site region 145040	1804 bp upstream
Tssr145041	transcription start site region 145041	1841 bp upstream
Tssr145042	transcription start site region 145042	1859 bp upstream
Tssr145043	transcription start site region 145043	1914 bp upstream
Tssr145044	transcription start site region 145044	1931 bp upstream
Tssr145045	transcription start site region 145045	1941 bp upstream
Tssr145046	transcription start site region 145046	1960 bp upstream
Tssr148467	transcription start site region 148467	1766 bp upstream
Tssr148468	transcription start site region 148468	1729 bp upstream
Tssr148469	transcription start site region 148469	1635 bp upstream
Tssr148470	transcription start site region 148470	29 bp downstream
Tssr148471	transcription start site region 148471	48 bp downstream
Tssr148472	transcription start site region 148472	64 bp downstream
Tssr148473	transcription start site region 148473	81 bp downstream
Tssr148474	transcription start site region 148474	100 bp downstream
Tssr148475	transcription start site region 148475	629 bp downstream
Tssr148476	transcription start site region 148476	657 bp downstream
Tssr148477	transcription start site region 148477	688 bp downstream
Tssr148478	transcription start site region 148478	1400 bp downstream
Tssr148479	transcription start site region 148479	1438 bp downstream
Tssr148480	transcription start site region 148480	1916 bp downstream
Tssr148481	transcription start site region 148481	1946 bp downstream