rs33276554 SNP Detail

Summary

• ID
  rs33276554
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:34264543 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAAAATTAAC TTGGGTAATG GGTGAAGGTC TTGTAGAGAA
  TTTAACTAAA AATGAAAATA TGTATTACCA ATATAATTTC TTCATTTCAA CATTCCAAAT
  R
  TTTACTTCCA ATTGGAGGGT GTGCTTGTAA TAAATGATAT AATTTAACAT ATTTTCCAAA
  ATGAAGATTC GTAACAAAGT ATCTTACTCC CATATCAAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45758768	mCV24460662	ABI	CRAMUS_MOUSE	f	SNP		A		G		A
ss61134505	NES16640501	PERLEGEN	MM_PANEL2	f	SNP	G		A		G		G	G	G	G	G	G	A
ss148217058	ENSMUSSNP1026305	ENSEMBL	ENSEMBL_Sanger	f	SNP		A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33276554					SNP	G	A	A	G	G	A	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61134505	NES16640501	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:34264543 () rs orientation: forward

Symbol	Name	Function Class
Poln	DNA polymerase N	within coordinates
Tssr50627	transcription start site region 50627	1396 bp upstream
Tssr50628	transcription start site region 50628	1379 bp upstream