rs33276774 SNP Detail

Summary

• ID
  rs33276774
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:42300826 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAGAGGGT ACACTAATTG
  TCAGGACAAG CCCTCCACCC CCCTCAAAAT AATCTGCACA TGTTTGAAAA TTCAATTTCT
  TTTTTTCATA TACAAATTTT GGTGTGCTCA CTAATACACA GAAATCAATT ATTTCTGTGG
  TACAGTTACA TGCAGGAAAC TGCATACCCT CCTAAACTAA AGGAATATAG ATTTATTAAT
  R
  CATATCTGTA ATATCTCTTA AGGATTTTTG AACGTGTTTT TCACCTTGAA AGGACCTGCC
  TGAAGCCTAC ACAGCAGCGA AATCATTGTA GTCCAGTGTT TTTTTGTCAC ACACACAGAG
  AGCACAGATT TTTTTGATTA TGTAGATTTC TTTTCCTACT GCAGTTTCAT ATGCAAAGCA
  TGCATCGGCC ACATCCATGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47278640	NES11102305	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs33276774					SNP	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47278640	NES11102305	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:42300826 () rs orientation: forward

Symbol	Name	Function Class
Cpgi200	CpG island 200	290 bp proximal
Gm28175	predicted gene 28175	within coordinates
Rr410204	regulatory region 410204	1851 bp distal
Rr410205	regulatory region 410205	742 bp distal
Rr410206	regulatory region 410206	7 bp proximal
Rr410207	regulatory region 410207	273 bp proximal
Rr410208	regulatory region 410208	1036 bp proximal
Tssr6506	transcription start site region 6506	1856 bp downstream
Tssr6507	transcription start site region 6507	257 bp upstream