rs33278498 SNP Detail

Summary

• ID
  rs33278498
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:114363516 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTTG CAAATGGATG ATTGTCCTTG
  K
  GTGAGTCAGT AGACATCAGA GGCGG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss46255780	mCV22950659	ABI	CRAMUS_MOUSE	f	SNP	T	G	G
ss145772024	ENSMUSSNP1772691	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs33278498					SNP	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:114363516 () rs orientation: forward

Symbol	Name	Function Class
4921521C08Rik	RIKEN cDNA 4921521C08 gene	1104 bp upstream
Cpgi21080	CpG island 21080	614 bp distal
Mon1b	MON1 homolog B, secretory traffciking associated	within coordinates
Rr368624	regulatory region 368624	910 bp downstream
Rr401146	regulatory region 401146	1291 bp downstream
Rr670300	regulatory region 670300	1039 bp distal
Tssr79522	transcription start site region 79522	1287 bp downstream
Tssr79523	transcription start site region 79523	1254 bp downstream
Tssr79524	transcription start site region 79524	1042 bp downstream
Tssr79525	transcription start site region 79525	1022 bp downstream
Tssr79526	transcription start site region 79526	1844 bp upstream