rs33279109 SNP Detail

Summary

• ID
  rs33279109
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:23592170 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGCT GTGTCCCCTA GGGACTGGGC
  Y
  TAGCAAGCCC AGGGGGAAAA GTCAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45760002	mCV23736844	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T	C
ss148055968	ENSMUSSNP7245628	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		C
ss321488672	CHEV_5_22892990	CHEVERUD	SCREENING_POP	f	SNP						C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33279109					SNP	C	C	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:23592170 () rs orientation: forward

Symbol	Name	Function Class
4930580E04Rik	RIKEN cDNA 4930580E04 gene	within coordinates
5031425E22Rik	RIKEN cDNA 5031425E22 gene	within coordinates
Cpgi15578	CpG island 15578	within coordinates
Gm43058	predicted gene 43058	448 bp downstream
Rr112206	regulatory region 112206	1570 bp distal
Rr112207	regulatory region 112207	1031 bp proximal
Rr124896	regulatory region 124896	within coordinates
Rr367795	regulatory region 367795	within coordinates
Tssr45359	transcription start site region 45359	89 bp upstream
Tssr45360	transcription start site region 45360	101 bp upstream
Tssr45361	transcription start site region 45361	128 bp upstream
Tssr50259	transcription start site region 50259	673 bp upstream
Tssr50260	transcription start site region 50260	248 bp upstream
Tssr50261	transcription start site region 50261	156 bp upstream
Tssr50262	transcription start site region 50262	111 bp upstream