rs33280201 SNP Detail

Summary

• ID
  rs33280201
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:107748357 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTAGAGTAT ATATATTTAA TAACCTTCCC CTAGCTAGGA
  ATAACAGCTG CCAATTGTAG TGCCTAGAAA GTTCAAGTGG AAAGATTAGG AGTTTTTTTT
  R
  AGGCAAGTTT AATTCAAATC CAGCCTGGCT ATGAAAGACC CTATGTTGTG GGGGGTGAGG
  GGGGTGGAAG GTGGAGACGA CAATAATAAT TCTCACACCA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47778687	NES11996902	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	G	A	A	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33280201					SNP	A	G	A	G	A	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47778687	NES11996902	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107748357 () rs orientation: forward

Symbol	Name	Function Class
4930506F14Rik	RIKEN cDNA 4930506F14 gene	1330 bp upstream
Cpgi22310	CpG island 22310	932 bp proximal
Rbm6	RNA binding motif protein 6	within coordinates
Rr401668	regulatory region 401668	1533 bp upstream
Rr686633	regulatory region 686633	925 bp proximal
Rr686634	regulatory region 686634	1341 bp proximal
Rr686635	regulatory region 686635	1653 bp proximal
Tssr87026	transcription start site region 87026	1802 bp upstream
Tssr91474	transcription start site region 91474	1245 bp downstream
Tssr91475	transcription start site region 91475	1529 bp downstream
Tssr91476	transcription start site region 91476	1590 bp downstream
Tssr91477	transcription start site region 91477	1625 bp downstream
Tssr91478	transcription start site region 91478	1667 bp downstream