rs33280230 SNP Detail

Summary

• ID
  rs33280230
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:4268187 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACTCTTGG ACTTAGAGGA
  TGCACAGCAG ATCCCAGAGT TGAGAGGAGA GAGGAAGAAT AGCGGGATGA AAGAAAGGGA
  GAGAAATAGG AAACACGATG GTGGCTCTGC CTTCTGTGGG GCAGAGCATC TCAACTTTGC
  TGGCCCACAG GCAGTCAAGT CCTCAGAAAC TTCCTGGCAG AGCTGAATTT GTGGAGTATC
  R
  AAAAACACGA TTACAGAGGG AAAGAGAACT CTCTAAAATG TGTATGAAGA AACTGAGAGC
  ACTCTGAGTA TCTCAACCCA GTTGAACAAC TAAAAGCTGT CACTTTAGTT TAGTTTGCCA
  GCTCATGGAT CCAGTGGGGC AGGTGTGCCT TATAAGGCAT CTTACCCATA GAGGATGTTA
  AACCAAGACC CTGGTCTGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46256558	mCV23160205	ABI	CRAMUS_MOUSE	f	SNP		G	A						A
ss61075540	NES16047888	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	A	A	A	A	A	A	A	A	G	A
ss148555689	ENSMUSSNP5963799	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33280230					SNP	G	G	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61075540	NES16047888	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:4268187 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20046	CpG island 20046	744 bp distal
Prr36	proline rich 36	728 bp upstream
Rr658993	regulatory region 658993	385 bp distal
Tssr80256	transcription start site region 80256	1184 bp upstream
Tssr80257	transcription start site region 80257	1144 bp upstream
Tssr80258	transcription start site region 80258	1061 bp upstream
Tssr80259	transcription start site region 80259	1019 bp upstream
Tssr80260	transcription start site region 80260	935 bp upstream
Tssr80261	transcription start site region 80261	886 bp upstream
Tssr80262	transcription start site region 80262	684 bp upstream