rs33280306 SNP Detail

Summary

• ID
  rs33280306
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164751473 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAGC CACCCACCCA CATTTCAGCC
  Y
  TACAGAGGCC CAGGAGGGTT CTCCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45258877	mCV23132976	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss148232886	ENSMUSSNP150058	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
ss320607079	CHEV_2_164735053	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs33280306					SNP	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164751473 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12677	CpG island 12677	941 bp proximal
Rr367365	regulatory region 367365	959 bp upstream
Rr569758	regulatory region 569758	92 bp proximal
Rr569759	regulatory region 569759	200 bp proximal
Rr569760	regulatory region 569760	542 bp proximal
Rr569761	regulatory region 569761	1341 bp proximal
Rr569762	regulatory region 569762	1775 bp proximal
Rr569763	regulatory region 569763	1842 bp proximal
Tssr21686	transcription start site region 21686	1874 bp upstream
Tssr27593	transcription start site region 27593	1622 bp downstream
Tssr27594	transcription start site region 27594	1665 bp downstream
Tssr27595	transcription start site region 27595	1705 bp downstream
Zfp335	zinc finger protein 335	Intron
Zfp335os	zinc finger protein 335, opposite strand	1880 bp upstream