rs33280523 SNP Detail

Summary

• ID
  rs33280523
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:42298620 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAATCCCT CTGCAGCTTT
  TACAAGCAAA CTTGAGCTGC CGTGCTGTAA TAGCTGGAAA AGTTAATGTA GCTTGAACGA
  GGTTTCTAAT TGTCCCTGTC TCTGTCATAT TTGTCTACTT GAATGGTCCT AAATACCACA
  GCGATTAATT ACTACAGAGC AGGTATTACA AGATGTTATC ATCTTTCCCC AACCGTCTGG
  R
  TGAATGGAGA GAAGGGGAGA TTGTTACAGT GTTTCATCTC TGCTCTTCCT GTAAGACACT
  TTAACCAGAA GATTTAACGT GTCAAAGTTA ACAGCGTTTC TAGCAGATAT TCACATTCTA
  ATTAAAGATT AAGAACGTAG TACATTACAC TGTGATTTGT CATACATGGC TTGTTAAATA
  GGAAACCTAC CGGGATTCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47278604	NES11102271	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33280523					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47278604	NES11102271	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:42298620 () rs orientation: forward

Symbol	Name	Function Class
Gm28175	predicted gene 28175	within coordinates
Gm70195	predicted gene, 70195	413 bp downstream
Rr406833	regulatory region 406833	917 bp distal
Rr410203	regulatory region 410203	491 bp distal
Rr410204	regulatory region 410204	within coordinates
Rr410205	regulatory region 410205	356 bp proximal
Tssr6506	transcription start site region 6506	343 bp upstream