rs33280977 SNP Detail

Summary

• ID
  rs33280977
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:107749257 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAGT TAAAAGAAAA GCACATTATT
  W
  ACAACGCCAA AAGGAATCTA AAGCA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47778693	NES11996906	PERLEGEN	MM_PANEL2	f	SNP	A	T	A	T	A	T	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33280977					SNP	A	T	A	T	A	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47778693	NES11996906	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107749257 () rs orientation: forward

Symbol	Name	Function Class
4930506F14Rik	RIKEN cDNA 4930506F14 gene	430 bp upstream
Cpgi22310	CpG island 22310	32 bp proximal
Rbm6	RNA binding motif protein 6	within coordinates
Rr401668	regulatory region 401668	633 bp upstream
Rr686633	regulatory region 686633	25 bp proximal
Rr686634	regulatory region 686634	441 bp proximal
Rr686635	regulatory region 686635	753 bp proximal
Tssr87026	transcription start site region 87026	902 bp upstream
Tssr91474	transcription start site region 91474	345 bp downstream
Tssr91475	transcription start site region 91475	629 bp downstream
Tssr91476	transcription start site region 91476	690 bp downstream
Tssr91477	transcription start site region 91477	725 bp downstream
Tssr91478	transcription start site region 91478	767 bp downstream