rs33281206 SNP Detail

Summary

• ID
  rs33281206
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:107971742 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCCG CTACACTCAG TGGCGACCTG
  R
  GACCCGCAGG GCCCTGTATA AGCTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	DBA/2J	NZW/LacJ	PWD/PhJ
ss47779427	NES11990245	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	DBA/2J	NZW/LacJ	PWD/PhJ
rs33281206					SNP	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47779427	NES11990245	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107971742 () rs orientation: forward

Symbol	Name	Function Class
Apeh	acylpeptide hydrolase	6 bp upstream
Bsn	bassoon	1479 bp downstream
Cpgi22322	CpG island 22322	within coordinates
Gm57046	predicted gene, 57046	112 bp upstream
Rr401675	regulatory region 401675	within coordinates
Rr686707	regulatory region 686707	247 bp distal
Rr686708	regulatory region 686708	29 bp proximal
Rr686709	regulatory region 686709	53 bp proximal
Rr686710	regulatory region 686710	1213 bp proximal
Rr686711	regulatory region 686711	1737 bp proximal
Rr686712	regulatory region 686712	1959 bp proximal
Tssr87065	transcription start site region 87065	114 bp upstream
Tssr87066	transcription start site region 87066	649 bp upstream
Tssr87067	transcription start site region 87067	694 bp upstream
Tssr91491	transcription start site region 91491	56 bp upstream
Tssr91492	transcription start site region 91492	1 bp upstream