rs33281652 SNP Detail

Summary

• ID
  rs33281652
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:81252023 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTGAGAGCG CGGGAGGGCG CGGGGCCGGG CGGGAGGAGG
  CTCCCGCGGG GGAGAGAGGC GGGCGGGCGG CCGTGGGAGG GAGAGTGCGG GGCAGGTGGC
  R
  GGGAGGGAGG GCGCTCGGCG GAGCGCCGAG GCCAAGTGCA TTGTGTCTGG CGGCGGCGGC
  GAGCCCACCG GCGGCGGCTG CTGGCCGGGA AGCCATGGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss39517239	mCV27577781	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs33281652					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:81252023 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9543	CpG island 9543	within coordinates
D17Mit258	DNA segment, Chr 17, Massachusetts Institute of Technology 258	1970 bp proximal
Gm65830	predicted gene, 65830	within coordinates
Gm65833	predicted gene, 65833	266 bp downstream
Rr340234	regulatory region 340234	within coordinates
Tmem178	transmembrane protein 178	38 bp upstream
Tssr145973	transcription start site region 145973	737 bp downstream
Tssr145974	transcription start site region 145974	590 bp downstream
Tssr145975	transcription start site region 145975	17 bp upstream
Tssr145976	transcription start site region 145976	56 bp upstream