rs33281789 SNP Detail

Summary

• ID
  rs33281789
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:42299338 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTTTTTT TTTTTTTTCC
  ACTTTTGCTT TTGGCTGCCC GCTAAGTAGA GGAAGGTAAG AGTCTTTGTT TGAATTGGAG
  TGCCAAAGGA CAGAATAAAG ATGAAACAGT ATTTCAATAT GCAGCCACAG CCTTCAGCTG
  CTTCCAGCAG CCCTGATCGT ACCAGTTCCG GTACTAGTGG TACAGGACTG GTTCACATTC
  R
  AAGATTGCCT GCGGAATAAA TTAATGAGAT ACTGGTCATT TGCATATTCA CGGTTGCATA
  CTAGGTAGAA AGCAAAGGCC AGGTGTGTTG AATTTGGGGG TTAGATCTGC TAAGAAGTCA
  CATCTTTCTC TTCCTCAGAA ACAGGGTGCC CTAACAGTAA AAACAATAGT AAGGCGAAAC
  TCTTGCTTAA TGAACACTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47278610	NES11102279	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33281789					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47278610	NES11102279	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:42299338 () rs orientation: forward

Symbol	Name	Function Class
Cpgi200	CpG island 200	1778 bp proximal
Gm28175	predicted gene 28175	within coordinates
Gm70195	predicted gene, 70195	1131 bp downstream
Rr406833	regulatory region 406833	1635 bp distal
Rr410203	regulatory region 410203	1209 bp distal
Rr410204	regulatory region 410204	363 bp distal
Rr410205	regulatory region 410205	within coordinates
Rr410206	regulatory region 410206	1495 bp proximal
Rr410207	regulatory region 410207	1761 bp proximal
Tssr6506	transcription start site region 6506	368 bp downstream
Tssr6507	transcription start site region 6507	1745 bp upstream