rs33282760 SNP Detail

Summary

• ID
  rs33282760
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:122295766 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTATATAAC TTTCTGAGTT
  CAAGAAAGAT AATTCAAAAG ATAGGTAGTA GCAACCCTTA CAGAATTCTC CCAACCTCTC
  TCTAAAATGT AAAAGAGCAT TAGCGCACAC AAGAAGCTCA CACAAATTAC TTAATGTGCC
  ACTCACAGTG GATTAACATT TTTTTGGCTT ATCTTGGGGG CTTCTTTTTT CCAAATATTG
  K
  ATCGTAGATG CTTTATTGCA GTATTATGAA ATTTTGCCAG TGCTGGGAAT TGAACCCAAG
  GTCTCACACA TACTCGACAA GCATTCTCAC CACGGAGCCG TATATCTAGC TCTTCTTGTT
  CACCAATGTG CCAGAGTATT TGAATCCCCA ACGTTCCAAC CTCCTCCTCT TTATGATTCT
  CCACAGGCAA GCAACCCCAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss45759766	mCV22536785	ABI	CRAMUS_MOUSE	f	SNP	G	T	T
ss149186865	ENSMUSSNP4680413	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		T		G
ss321668908	CHEV_5_122607712	CHEVERUD	SCREENING_POP	f	SNP				G		T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs33282760					SNP	G	T	T	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:122295766 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16545	CpG island 16545	45 bp proximal
Gm73495	predicted gene, 73495	within coordinates
Ppp1cc	protein phosphatase 1 catalytic subunit gamma	575 bp upstream
Rr124301	regulatory region 124301	within coordinates
Tssr48638	transcription start site region 48638	562 bp upstream