rs33282850 SNP Detail

Summary

• ID
  rs33282850
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:131994377 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTATCCCTA TTCCTATATA
  TGAAATACAC TTCCAACTGA GTGTGCTACA TGGGCATTTT TTTTTTTTTT TACATAAAAC
  GTCACAGGAT CCCAAACACA ATATTCCCCT TAAAAGAAGA TAACAACAAA CAGGGAATCA
  GATCCATATT CTTTTTAGAA ATTCAGAGAT TCTTTCTAGC ACTATTACTG CTGTCTACCC
  M
  AAAAAAAAAA AAAAAATGGA TCTAAGAACT TTTGTCACAC AAAACAAACA TCGGAATATT
  CCAAGTTTTT CTGAAATTGA ATTTGGCAGA ATGGAAATAG ATCCAAGTGT TCTGTGTCGC
  CATATGTCAT CCGAGCTAGG TAACATGGAA ATATGTAAAT TGGCCCAGGA GCTCATCCCA
  GGCTCCCTAC CCACACCCTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45760146	mCV22284357	ABI	CRAMUS_MOUSE	f	SNP	A	C	A	A
ss144489513	ENSMUSSNP4381832	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33282850					SNP	A	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:131994377 () rs orientation: forward

Symbol	Name	Function Class
Auts2	autism susceptibility candidate 2	within coordinates
Gm42439	predicted gene 42439	531 bp downstream
Tssr53573	transcription start site region 53573	1626 bp upstream
Tssr53574	transcription start site region 53574	807 bp upstream
Tssr53575	transcription start site region 53575	551 bp downstream