rs33283039 SNP Detail

Summary

• ID
  rs33283039
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:11987628 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCAT CTATCTGCAC ACTTACCCTT
  Y
  GTGACCAGAT CCAAGCTCAT ATACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss39517447	mCV22930146	ABI	CRAMUS_MOUSE	f	SNP		C	T					C
ss48347120	NES12242182	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C	C	T		C	T	C	C		C	C		C
ss145165323	ENSMUSSNP1997548	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
ss325300448	CHEV_17_11961607	CHEVERUD	SCREENING_POP	f	SNP													C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs33283039					SNP	C	C	T	C	C	C	T	C	C	T	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48347120	NES12242182	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:11987628 () rs orientation: forward

Symbol	Name	Function Class
Prkn	parkin RBR E3 ubiquitin protein ligase	within coordinates
Rr334164	regulatory region 334164	173 bp proximal
Rr343776	regulatory region 343776	841 bp proximal