rs33283080 SNP Detail

Summary

• ID
  rs33283080
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:33858448 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATGGTGGCA CACACCTGTA ATCTCAGCAC ATGGGAGGCA
  GAGGCAGAAG GTTATCCTCA ACTATAAAGC AAGTTTGAGG CCAGCCCAGG ATATATGAGA
  M
  CCTGCTTCAA AAAACAAATT AAAAAAAAGG AGGAGGAAGA GGAGGAGGAG AGGACGATGA
  CAAAAAACCC TCATCACTGG GAAGATATAG TTCATTGCT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39517358	mCV24098861	ABI	CRAMUS_MOUSE	f	SNP	C	A	C
ss145493378	ENSMUSSNP4135893	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A		A
ss325366949	CHEV_17_33776419	CHEVERUD	SCREENING_POP	f	SNP					C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33283080					SNP	C	A	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:33858448 () rs orientation: forward

Symbol	Name	Function Class
Gm20507	predicted gene 20507	within coordinates
Pram1	PML-RAR alpha-regulated adaptor molecule 1	within coordinates
Rr392542	regulatory region 392542	19 bp upstream
Rr525901	regulatory region 525901	330 bp proximal
Tssr143785	transcription start site region 143785	1662 bp downstream
Tssr143786	transcription start site region 143786	1644 bp downstream
Tssr143787	transcription start site region 143787	1364 bp downstream
Tssr143788	transcription start site region 143788	1351 bp downstream
Tssr143789	transcription start site region 143789	1333 bp downstream
Tssr143790	transcription start site region 143790	1725 bp upstream
Tssr147440	transcription start site region 147440	437 bp downstream