rs33286896 SNP Detail

Summary

• ID
  rs33286896
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:66079490 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCCG GGATCCCCCG TAGGATGGCT
  Y
  CAGGACTTAC CCCGAGAAGA CACAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss39517496	mCV24592639	ABI	CRAMUS_MOUSE	f	SNP	C	C	T				T
ss62850170	NES17384869	PERLEGEN	MM_PANEL2	f	SNP	C			C	T	C	T		C	T	T		C
ss145840852	ENSMUSSNP3074930	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T				T
ss325428008	CHEV_17_66121835	CHEVERUD	SCREENING_POP	f	SNP								C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs33286896					SNP	C	C	T	C	T	C	T	C	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62850170	NES17384869	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:66079490 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9418	CpG island 9418	within coordinates
Rab31	RAB31, member RAS oncogene family	within coordinates
Rr529807	regulatory region 529807	within coordinates
Rr529808	regulatory region 529808	37 bp proximal
Rr529809	regulatory region 529809	135 bp proximal
Rr529810	regulatory region 529810	1082 bp proximal
Rr529811	regulatory region 529811	1187 bp proximal
Rr529812	regulatory region 529812	1392 bp proximal
Tssr149074	transcription start site region 149074	140 bp downstream
Tssr149075	transcription start site region 149075	170 bp downstream
Tssr149076	transcription start site region 149076	191 bp downstream