rs33287000 SNP Detail

Summary

• ID
  rs33287000
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:166557725 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACTGTCAGA AAGAATGACC GAGCACTTCC ACATCTGTGG
  ACGGGCCCCT CACATCATCT CCCACCCTGG AACAGTGACA CTGCCTAGCA CACGTGTCTG
  R
  ATTTCTTGTG GAGCTCTTTG TTGCTGGTTT GTTGGATTTA TGTAGCCCAG GACAGCCCTG
  AACTCCTGAT CCTCCCGCCC CAGTCCCCAG AACGCTAGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45259956	mCV22936775	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	A
ss148258397	ENSMUSSNP39995	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33287000					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:166557725 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12723	CpG island 12723	1178 bp distal
Gm46777	predicted gene, 46777	1318 bp upstream
Gm57440	predicted gene, 57440	823 bp downstream
Prex1	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	1973 bp upstream
Rr397493	regulatory region 397493	1732 bp downstream
Rr570357	regulatory region 570357	1483 bp distal
Tssr21773	transcription start site region 21773	1689 bp downstream
Tssr27710	transcription start site region 27710	1978 bp upstream