rs33287844 SNP Detail

Summary

• ID
  rs33287844
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:52209457 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ACTGGCTTCA TCCCTTTACA TAGAAGATTT TCAGGTTAGT TTCACTACAA ATCAGACTTC
  AAGGTTTCCC TGGCACTGTA GCTATGGCCT CCGGTTGTGA CCACTAGTCA TTGATAGCTC
  CATGAAAACA TACACAAACA CACACACACA CACACACACA CACACACACA CACACAAAGT
  CTTATACACA CACGCCCAAA CATACACATT CACACACAGA CACTCACATA CTCATTTATA
  CACACATTGA CACACAACAC TCACATACAA ATTTACACAC ACACACACAC ACACACACAC
  W
  CACTCAAACA TACACATTCA CACACATATA CTCACACACT CACTTATTCA CACACACTGG
  CATACATATA CTCACATATA AATTCACACA GATATACATT TTGCCTATAA GTGCAGCATA
  GTCTCTAGAG TATCATGTTT TTCATAGTTA GTGATTTATA TATTGCATAC ATACCAGAGT
  ATATGCATAC TCGTGGAAGT CAGAGGACAA CTTATGGAAT CAGTTTTCCT TTTCACCACA
  TAGATTTCCT GTATGAAACT GTCGTTTTTA AAGGCTCTTC TAAGTCCTTT ATCTCTTTGC
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
ss39517014	mCV25232009	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
rs33287844					SNP	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:52209457 () rs orientation: forward

Symbol	Name	Function Class
Gm20098	predicted gene, 20098	within coordinates
Rr335418	regulatory region 335418	544 bp proximal
Rr370289	regulatory region 370289	1650 bp upstream
Rr405357	regulatory region 405357	1366 bp upstream
Tssr145177	transcription start site region 145177	1776 bp upstream
Tssr148690	transcription start site region 148690	1491 bp downstream
Tssr148691	transcription start site region 148691	1521 bp downstream