rs33288387 SNP Detail

Summary

• ID
  rs33288387
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:128551120 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TACTCACACT CAGAAAACAT GCAATTGAGC TATTAAACAA
  AATCACACAC ACACACACAC ACACACACAC ACACACACAC ACACACACAC ACAAACATCA
  W
  AATGTTTAAA GTTAGTTTAC AATTTTATTT GGTTTGCACT CATAGCTACT TTCAGCCACA
  TTCAGCCATG GGTTGGGCAC CCTGGAGCTG CTTGGTCTT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45260068	mCV23914752	ABI	CRAMUS_MOUSE	f	SNP		A	A	T
ss147568416	ENSMUSSNP1729834	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33288387					SNP	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:128551120 () rs orientation: forward

Symbol	Name	Function Class
D2Mit305	DNA segment, Chr 2, Massachusetts Institute of Technology 305	within coordinates
D2Mit305.1	DNA segment, Chr 2, Massachusetts Institute of Technology 305.1	70 bp distal
Mertk	MER proto-oncogene tyrosine kinase	within coordinates
Rr58325	regulatory region 58325	1720 bp distal
Rr58326	regulatory region 58326	within coordinates
Tssr20064	transcription start site region 20064	466 bp downstream
Tssr20065	transcription start site region 20065	417 bp downstream
Tssr20066	transcription start site region 20066	135 bp downstream
Tssr20067	transcription start site region 20067	93 bp downstream