rs33288395 SNP Detail

Summary

• ID
  rs33288395
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:44289620 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAATATAAT TTCCTAGACT
  TTCACTGTCC CAACTTTTAG CGCTCTAGAT CTCCACCCTC TGCTAGGGTC TTCCAACAGC
  AATTCTTCAC TTGATTATTT AATTTGCTTT GCCCAATGGA ACAAGTGGAA ATGTGTCGAC
  AGCCACTGGA ACAGCATGTA CACCGTGACT TAACTTCCGC AAACAGCCTG TGCTAGCCTG
  W
  TGAAAGGTGA CCAGCCATAT GGAAGACTCA AGTCAAGATC ATCTGGCAAG TGATCTAGAC
  AAATCAAGCT GACTAGAACT GCCTCTGCCA ACTCGTAACT GAATGAGCAG TGAGGAGAAC
  CTGCTGGCTT GAGCCATTAG GTTTTGTTCC TTCGAATTTT GTTTCCAATC AATTGGCTAA
  CTAAACATGG CCGGATCATT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49467411	NES12601203	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33288395					SNP	T	T	T	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49467411	NES12601203	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:44289620 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7073	CpG island 7073	1103 bp proximal
Eny2	ENY2 transcription and export complex 2 subunit	1868 bp upstream
Nudcd1	NudC domain containing 1	within coordinates
Rr311712	regulatory region 311712	within coordinates
Rr404372	regulatory region 404372	1564 bp upstream
Tssr131224	transcription start site region 131224	1176 bp upstream
Tssr131225	transcription start site region 131225	1849 bp upstream
Tssr134195	transcription start site region 134195	1570 bp downstream
Tssr134196	transcription start site region 134196	1603 bp downstream